NI-KA and Spdrcrj25; I am not an engine builder, but would point out that there are multiple threads containing annecdotal information from various sources expressing the same points that you are making. The problem comes in the obvious dicotomy of purpose between most OEM vs. custom engine builders...to say nothing of the differences in cost and application (a dependable 2000-mile-at-a-time cruiser vs. any race application...be it enduro, sprint or drag.
As the majority of Vipers do not see track use, it is my guess that their owners want a long term product associated with some degree of dependability (and a warranty for as long as possible!!!).
Believe it or not, Indianapolis is not short of engine builders for all types of "power" applications(except Vipers, of course)...especially if cost is no object. Many of these builders have feelings similar to yours...but, if it blows up, it blows up!!
Since the good folks at Dodge have outlined a specific break-in procedure, I'm inclined to follow their suggestions...especially as they likely have statistically revelant and valid data to support their recommendations. This approach has worked quite well for me with a variety of English, Italian, and German sports cars as well...as well as "more than one Viper".
I will also look forward to hearing from a "reputable mechanic".